Bioserve Publications (3): Molecular Services

See also:


Thermally denatured state determines refolding in lipase: Mutational analysis
Ahmad S, Rao NM

Protein Sci. 2009 Jun; 18(6):1183-96
doi: 10.1002/pro.126


Probing protein stability and proteolytic resistance by loop scanning: A comprehensive mutational analysis
Ahmad S, Kumar V, Ramanand KB, Rao NM

Protein Sci. 2012 Mar; 21(3):433-46
doi: 10.1002/pro.2029


Thrombophilic gene polymorphism studies in G6PD deficient individuals from Saudi population
Alharbi KK, Khan IA, Syed R

Bioinformation. 2012;8(25):1255-9
doi: 10.6026/97320630081255


Insertion/Deletion polymorphisms do play any role in G6PD deficiency individuals in the Kingdom of the Saudi Arabia
Alharbi KK, Khan IA, Abed AS, Syed R

Bioinformation. 2013;9(1):49-53
doi: 10.6026/97320630009049


Genetic predictors of acute toxicities related to radiation therapy following lumpectomy for breast cancer: a case-series study
Ambrosone CB, Tian C, Ahn J, Kropp S, Helmbold I, von Fournier D, Haase W, Sautter-Bihl ML, Wenz F, Chang-Claude J

Breast Cancer Res. 2006; 8(4):R40
DOI: 10.1186/bcr1526


Analysis of Lipooligosaccharide Biosynthesis in the Neisseriaceae
Arking D, Tong Y, Stein DC

J Bacteriol. 2001 Feb; 183(3):934-41
DOI: 10.1128/JB.183.3.934-941.2001


Analysis of Oligonucleotide DNA Binding and Sedimentation Properties of Montmorillonite Clay Using Ultraviolet Light Spectroscopy
Gary W. Beall, Drew S. Sowersby, Rachel D. Roberts, Michael H. Robson, L. Kevin Lewis

Biomacromolecules. 2009 Jan 12; 10(1): 105–112
doi: 10.1021/bm800970v


Genotyping faecal samples of Bengal tiger Panthera tigris tigris for population estimation: A pilot study
Jyotsna Bhagavatula, Lalji Singh

BMC Genetics 2006 7:48
https://doi.org/10.1186/1471-2156-7-48


Predictors of Acquired Lipodystrophy in Juvenile-Onset Dermatomyositis and a Gradient of Severity
Bingham A, Mamyrova G, Rother KI, Oral E, Cochran E, Premkumar A, Kleiner D, James-Newton L, Targoff IN, Pandey JP, Carrick DM, Sebring N, O'Hanlon TP, Ruiz-Hidalgo M, Turner M, Gordon LB, Laborda J, Bauer SR, Blackshear PJ, Imundo L, Miller FW, Rider LG; Childhood Myositis Heterogeneity Study Group

Medicine (Baltimore). 2008 Mar; 87(2):70-86
doi: 10.1097/MD.0b013e31816bc604.


The lgtABCDE Gene Cluster, Involved in Lipooligosaccharide Biosynthesis in Neisseria gonorrhoeae, Contains Multiple Promoter Sequences
Braun DC, Stein DC

J Bacteriol. 2004 Feb; 186(4):1038-49


Haplotype Analyses of CYP19A1 Gene Variants and Breast Cancer Risk: Results from the Shanghai Breast Cancer Study
Cai Q, Kataoka N, Li C, Wen W, Smith JR, Gao YT, Shu XO, Zheng W

Cancer Epidemiol Biomarkers Prev. 2008 Jan; 17(1):27-32
doi: 10.1158/1055-9965


Association of genetic polymorphisms in CYP19A1 and blood levels of sex hormones among postmenopausal Chinese women
Cai H, Shu XO, Egan KM, Cai Q, Long JR, Gao YT, Zheng W

Pharmacogenet Genomics. 2008 Aug; 18(8):657-64
doi: 10.1097/FPC.0b013e3282fe3326


RNase H Cleavage of the 5′ End of the Human Immunodeficiency Virus Type 1 Genome
Hong-Qiang Gao, Stefan G. Sarafianos, Edward Arnold, Stephen H. Hughes

Journal of Virology. 2001
DOI: 10.1128/JVI.75.23.11874-11880.2001


The bipolar disorder risk allele at CACNA1C also confers risk of recurrent major depression and of schizophrenia
Green EK, Grozeva D, Jones I, Jones L, Kirov G, Caesar S, Gordon-Smith K, Fraser C, Forty L, Russell E, Hamshere ML, Moskvina V, Nikolov I, Farmer A, McGuffin P; Wellcome Trust Case Control Consortium, Holmans PA, Owen MJ, O'Donovan MC, Craddock N

Mol Psychiatry. 2010 Oct; 15(10):1016-22
doi: 10.1038/mp.2009.49


A Mutational Analysis of Residues Essential for Ligand Recognition at the Human P2Y1 Receptor
Jiang Q, Guo D, Lee BX, Van Rhee AM, Kim YC, Nicholas RA, Schachter JB, Harden TK, Jacobson KA

Mol Pharmacol. 1997 Sep; 52(3):499-507


Glutathione S-transferase Gene Polymorphisms and Risk and Survival of Pancreatic Cancer
Jiao L, Bondy ML, Hassan MM, Chang DZ, Abbruzzese JL, Evans DB, Smolensky MH, Li D

Cancer. 2007 Mar 1;109(5):840-8
DOI: 10.1002/cncr.22468


The XPD Asp312Asn and Lys751Gln polymorphisms, corresponding haplotype, and pancreatic cancer risk
Jiao L, Hassan MM, Bondy ML, Abbruzzese JL, Evans DB, Li D

Cancer Lett. 2007 Jan 8;245(1-2):61-8
DOI: 10.1016/j.canlet.2005.12.026


XRCC2 and XRCC3 Gene Polymorphism and Risk of Pancreatic Cancer
Jiao L, Hassan MM, Bondy ML, Wolff RA, Evans DB, Abbruzzese JL, Li D

Am J Gastroenterol. 2008 Feb; 103(2):360-7 DOI: 10.1111/j.1572-0241.2007.01615.x


Suppression of Factor-Dependent Transcription Termination by Antiterminator RNA
Rodney A. King, Robert A. Weisberg

Journal of Bacteriology 2003 DOI: 10.1128/JB.185.24.7085-7091.2003


Constitutive Expression of a Transcription Termination Factor by a Repressed Prophage: Promoters for Transcribing the Phage HK022 nun Gene
King RA1, Madsen PL, Weisberg RA

J Bacteriol. 2000 Jan; 182(2):456-62


Contrasting effects of single stranded DNA binding protein on the activity of uracil DNA glycosylase from Escherichia coli towards different DNA substrates
N V Kuma, U Varshney

Nucleic Acids Res. 1997 Jun 15; 25(12): 2336–2343


The git5 Gb and git11 Gg Form an Atypical Gbg Dimer Acting in the Fission Yeast Glucose/cAMP Pathway
Sheila Landry, Charles S Hoffman

Genetics 157(3), March 2001


DNA sequences in gal operon override transcription elongation blocks
Lewis DE, Komissarova N, Le P, Kashlev M, Adhya S

J Mol Biol. 2008 Oct 17; 382(4):843-58
doi: 10.1016/j.jmb.2008.07.060


DNA Repair Gene Polymorphisms and Risk of Pancreatic Cancer
Li D, Suzuki H, Liu B, Morris J, Liu J, Okazaki T, Li Y, Chang P, Abbruzzese JL

Clin Cancer Res. 2009 Jan 15; 15(2):740-6
doi: 10.1158/1078-0432.CCR-08-1607.


Genetic polymorphisms in transforming growth factor beta-1 (TGFB1) and childhood asthma and atopy
Li H, Romieu I, Wu H, Sienra-Monge JJ, Ramírez-Aguilar M, del Río-Navarro BE, del Lara-Sánchez IC, Kistner EO, Gjessing HK, London SJ

Hum Genet. 2007 Jun; 121(5):529-38
DOI: 10.1007/s00439-007-0337-z


Effects of base excision repair gene polymorphisms on pancreatic cancer survival
Li D, Li Y, Jiao L, Chang DZ, Beinart G, Wolff RA, Evans DB, Hassan MM, Abbruzzese JL

Int J Cancer. 2007 Apr 15; 120(8):1748-54 DOI: 10.1002/ijc.22301


Single Nucleotide Polymorphisms of RecQ1, RAD54L and ATM Genes Are Associated With Reduced Survival of Pancreatic Cancer
Li D, Frazier M, Evans DB, Hess KR, Crane CH, Jiao L, Abbruzzese JL

J Clin Oncol. 2006 Apr 10;24(11):1720-8
DOI: 10.1200/JCO.2005.04.4206


Characterization of Coliphage PR772 and Evaluation of Its Use for Virus Filter Performance Testing
Lute S, Aranha H, Tremblay D, Liang D, Ackermann HW, Chu B, Moineau S, Brorson K

Appl Environ Microbiol. 2004 Aug; 70(8):4864-71
DOI: 10.1128/AEM.70.8.4864-4871.2004


DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription
Majdalani N, Cunning C, Sledjeski D, Elliott T, Gottesman S

Proc Natl Acad Sci U S A. 1998 Oct 13; 95(21):12462-7.


FGFR2 intronic SNPs and breast cancer risk; associations with tumor characteristics and interactions with exogenous exposures and other known breast cancer risk factors
Marian C, Ochs-Balcom HM, Nie J, Kallakury BV, Ambrosone CB, Trevisan M, Edge S, Shields PG, Freudenheim JL

Int J Cancer. 2011 Aug 1; 129(3):702-12
doi: 10.1002/ijc.25686


Human P2Y1 Receptor: Molecular Modeling and Site-Directed Mutagenesis as Tools To Identify Agonist and Antagonist Recognition Sites
Stefano Moro, Danping Guo, Emidio Camaioni, José L. Boyer, T. Kendall Harden, Kenneth A. Jacobson

J Med Chem. 1998 Apr 23; 41(9): 1456–1466
doi: 10.1021/jm970684u


Telmisartan directly ameliorates the neuronal inflammatory response to IL-1β partly through the JNK/c-Jun and NADPH oxidase pathways
Pang T, Wang J, Benicky J, Sánchez-Lemus E, Saavedra JM

J Neuroinflammation. 2012 May 29;9:102
doi: 10.1186/1742-2094-9-102


Biochemical Properties of Neisseria gonorrhoeae LgtE
Andrzej Piekarowicz, Daniel C. Stein

Journal of Bacteriology 2002
DOI: 10.1128/JB.184.23.6410-6416.2002


Genome Erosion in a Nitrogen-Fixing Vertically Transmitted Endosymbiotic Multicellular Cyanobacterium
Liang Ran, John Larsson, Theoden Vigil-Stenman, Johan A. A. Nylander, Karolina Ininbergs, Wei-Wen Zheng, Alla Lapidus, Stephen Lowry, Robert Haselkorn, Birgitta Bergman

PLoS One July 8, 2010
https://doi.org/10.1371/journal.pone.0011486


rs4919510 in hsa-mir-608 Is Associated with Outcome but Not Risk of Colorectal Cancer
Bríd M. Ryan, Andrew C. McClary, Nicola Valeri, Dillon Robinson, Alessio Paone, Elise D. Bowman, Ana I. Robles, Carlo Croce, Curtis C. Harris

PLoS One May 11, 2012
https://doi.org/10.1371/journal.pone.0036306


Genetic Polymorphisms in CYP17, CYP3A4, CYP19A1, SRD5A2, IGF-1, and IGFBP-3 and Prostate Cancer Risk in African-American Men: The Flint Men’s Health Study
Sarma AV, Dunn RL, Lange LA, Ray A, Wang Y, Lange EM, Cooney KA

Prostate. 2008 Feb 15; 68(3):296-305
doi: 10.1002/pros.20696.


Human B-cell lines constitutively express and secrete interleukin-16
Sharma V, Sparks JL, Vail JD

Immunology. 2000 Feb; 99(2):266-71.


GSTM1, GSTT1, GSTP1, and GSTA1 Polymorphisms and Urinary Isothiocyanate Metabolites following Broccoli Consumption in Humans
Susan E. Steck, Marilie D. Gammon, James R. Hebert, Denise E. Wall, Steven H. Zeisel

J Nutr. 2007 Apr; 137(4): 904–909
doi: 10.1093/jn/137.4.904


Probable Identification of a Membrane-Associated Repressor of Bacillus subtilis DNA Replication as the E2 Subunit of the Pyruvate Dehydrogenase Complex
Andrew Stei, William Firshein

J Bacteriol. 2000 Apr; 182(8): 2119–2124


Suppressors of an Adenylate Cyclase Deletion in the Fission Yeast Schizosaccharomyces pombe
Stiefel J, Wang L, Kelly DA, Janoo RT, Seitz J, Whitehall SK, Hoffman CS

Eukaryot Cell. 2004 Jun; 3(3):610-9
DOI: 10.1128/EC.3.3.610-619.2004


Dominant Suppression of Repeat-Induced Point Mutation in Neurospora crassa by a Variant Catalytic Subunit of DNA Polymerase-ζ
Ranjan Tamuli, Durgadas P. Kasbekar

Protein Sci. 1998 Oct; 7(10): 2143–2149.
doi: 10.1002/pro.5560071011


Construction, expression, and characterization of a novel fully activated recombinant single-chain hepatitis C virus protease
S.S. Taremi, B. Beyer, M. Maher, N. Yao, W. Prosise, P.C. Weber, B.A. Malcolm

Protein Sci. 1998 Oct; 7(10): 2143–2149
doi: 10.1002/pro.5560071011


Redundant In Vivo Proteolytic Activities of Escherichia coli Lon and the ClpYQ (HslUV) Protease
Wu WF, Zhou Y, Gottesman S

J Bacteriol. 1999 Jun; 181(12):3681-7


The Effect of Maintaining Cognition on Risk of Disability and Death
Yaffe K, Lindquist K, Vittinghoff E, Barnes D, Simonsick EM, Newman A, Satterfield S, Rosano C, Rubin SM, Ayonayon HN, Harris T; Health, Aging and Body Compsition Study

J Am Geriatr Soc. 2010 May; 58(5):889-94
doi: 10.1111/j.1532-5415.2010.02818.x


Telomere length and cognitive function in community-dwelling elders: Findings from the Health ABC Study
Yaffe K, Lindquist K, Kluse M, Cawthon R, Harris T, Hsueh WC, Simonsick EM, Kuller L, Li R, Ayonayon HN, Rubin SM, Cummings SR; Health ABC Study

Neurobiol Aging. 2011 Nov; 32(11):2055-60
doi: 10.1016/j.neurobiolaging.2009.12.006


Predictors of maintaining cognitive function in older adults
K Yaffe, MD, A J. Fiocco, PhD, K Lindquist, MS, E Vittinghoff, PhD, E M. Simonsick, PhD, A B. Newman, MD, S Satterfield, MD, C Rosano, MD, S M. Rubin, MD, H N. Ayonayon, PhD, T B. Harris, MD, For the Health ABC Study

Neurology. 2009 Jun 9; 72(23): 2029–2035
doi: 10.1212/WNL.0b013e3181a92c36


The specificity of interaction of archaeal transducers with their cognate sensory rhodopsins is determined by their transmembrane helices
Xue-Nong Zhang, Jingya Zhu, John L. Spudich

Proc Natl Acad Sci U S A. 1999 Feb 2; 96(3): 857–862


Polymorphisms in hOGG1 and XRCC1 and Risk of Prostate Cancer: Effects Modified by Plasma Antioxidants
Zhang J, Dhakal IB, Greene G, Lang NP, Kadlubar FF

Urology. 2010 Apr; 75(4):779-85
doi: 10.1016/j.urology.2009.08.063