Publications: BioServe — Molecular Services

Thermally denatured state determines refolding in lipase: Mutational analysis

Ahmad S, Rao NM
Protein Sci. 2009 Jun; 18(6):1183-96
doi: 10.1002/pro.126

Probing protein stability and proteolytic resistance by loop scanning: A comprehensive mutational analysis

Ahmad S, Kumar V, Ramanand KB, Rao NM
Protein Sci. 2012 Mar; 21(3):433-46
doi: 10.1002/pro.2029

Thrombophilic gene polymorphism studies in G6PD deficient individuals from Saudi population

Alharbi KK, Khan IA, Syed R
Bioinformation. 2012; 8(25):1255-9
doi: 10.6026/97320630081255

Insertion/Deletion polymorphisms do play any role in G6PD deficiency individuals in the Kingdom of the Saudi Arabia

Alharbi KK, Khan IA, Abed AS, Syed R
Bioinformation. 2013; 9(1):49-53
doi: 10.6026/97320630009049

Genetic predictors of acute toxicities related to radiation therapy following lumpectomy for breast cancer: a case-series study

Ambrosone CB, Tian C, Ahn J, Kropp S, Helmbold I, von Fournier D, Haase W, Sautter-Bihl ML, Wenz F, Chang-Claude J
Breast Cancer Res. 2006; 8(4):R40
DOI: 10.1186/bcr1526

Analysis of Lipooligosaccharide Biosynthesis in the Neisseriaceae

Arking D, Tong Y, Stein DC
J Bacteriol. 2001 Feb; 183(3):934-41
DOI: 10.1128/JB.183.3.934-941.2001

Analysis of Oligonucleotide DNA Binding and Sedimentation Properties of Montmorillonite Clay Using Ultraviolet Light Spectroscopy

Gary W. Beall, Drew S. Sowersby, Rachel D. Roberts, Michael H. Robson, L. Kevin Lewis
Biomacromolecules. 2009 Jan 12; 10(1): 105–112
doi: 10.1021/bm800970v

Genotyping faecal samples of Bengal tiger Panthera tigris tigris for population estimation: A pilot study

Jyotsna Bhagavatula, Lalji Singh
BMC Genetics 2006 7:48
https://doi.org/10.1186/1471-2156-7-48

Predictors of Acquired Lipodystrophy in Juvenile-Onset Dermatomyositis and a Gradient of Severity

Bingham A, Mamyrova G, Rother KI, Oral E, Cochran E, Premkumar A, Kleiner D, James-Newton L, Targoff IN, Pandey JP, Carrick DM, Sebring N, O'Hanlon TP, Ruiz-Hidalgo M, Turner M, Gordon LB, Laborda J, Bauer SR, Blackshear PJ, Imundo L, Miller FW, Rider LG; Childhood Myositis Heterogeneity Study Group
Medicine (Baltimore). 2008 Mar; 87(2):70-86
doi: 10.1097/MD.0b013e31816bc604.

The lgtABCDE Gene Cluster, Involved in Lipooligosaccharide Biosynthesis in Neisseria gonorrhoeae, Contains Multiple Promoter Sequences

Braun DC, Stein DC
J Bacteriol. 2004 Feb; 186(4):1038-49

Haplotype Analyses of CYP19A1 Gene Variants and Breast Cancer Risk: Results from the Shanghai Breast Cancer Study

Cai Q, Kataoka N, Li C, Wen W, Smith JR, Gao YT, Shu XO, Zheng W
Cancer Epidemiol Biomarkers Prev. 2008 Jan; 17(1):27-32
doi: 10.1158/1055-9965

Association of genetic polymorphisms in CYP19A1 and blood levels of sex hormones among postmenopausal Chinese women

Cai H, Shu XO, Egan KM, Cai Q, Long JR, Gao YT, Zheng W
Pharmacogenet Genomics. 2008 Aug; 18(8):657-64
doi: 10.1097/FPC.0b013e3282fe3326

RNase H Cleavage of the 5′ End of the Human Immunodeficiency Virus Type 1 Genome

Hong-Qiang Gao, Stefan G. Sarafianos, Edward Arnold, Stephen H. Hughes
Journal of Virology. 2001
DOI: 10.1128/JVI.75.23.11874-11880.2001

The bipolar disorder risk allele at CACNA1C also confers risk of recurrent major depression and of schizophrenia

Green EK, Grozeva D, Jones I, Jones L, Kirov G, Caesar S, Gordon-Smith K, Fraser C, Forty L, Russell E, Hamshere ML, Moskvina V, Nikolov I, Farmer A, McGuffin P; Wellcome Trust Case Control Consortium, Holmans PA, Owen MJ, O'Donovan MC, Craddock N
Mol Psychiatry. 2010 Oct; 15(10):1016-22
doi: 10.1038/mp.2009.49

A Mutational Analysis of Residues Essential for Ligand Recognition at the Human P2Y1 Receptor

Jiang Q, Guo D, Lee BX, Van Rhee AM, Kim YC, Nicholas RA, Schachter JB, Harden TK, Jacobson KA
Mol Pharmacol. 1997 Sep; 52(3):499-507

Glutathione S-transferase Gene Polymorphisms and Risk and Survival of Pancreatic Cancer

Jiao L, Bondy ML, Hassan MM, Chang DZ, Abbruzzese JL, Evans DB, Smolensky MH, Li D
Cancer. 2007 Mar 1; 109(5):840-8
DOI: 10.1002/cncr.22468

The XPD Asp312Asn and Lys751Gln polymorphisms, corresponding haplotype, and pancreatic cancer risk

Jiao L, Hassan MM, Bondy ML, Abbruzzese JL, Evans DB, Li D
Cancer Lett. 2007 Jan 8; 245(1-2):61-8
DOI: 10.1016/j.canlet.2005.12.026

XRCC2 and XRCC3 Gene Polymorphism and Risk of Pancreatic Cancer

Jiao L, Hassan MM, Bondy ML, Wolff RA, Evans DB, Abbruzzese JL, Li D
Am J Gastroenterol. 2008 Feb; 103(2):360-7 DOI: 10.1111/j.1572-0241.2007.01615.x

Suppression of Factor-Dependent Transcription Termination by Antiterminator RNA

Rodney A. King, Robert A. Weisberg
Journal of Bacteriology 2003 DOI: 10.1128/JB.185.24.7085-7091.2003

Constitutive Expression of a Transcription Termination Factor by a Repressed Prophage: Promoters for Transcribing the Phage HK022 nun Gene

King RA1, Madsen PL, Weisberg RA
J Bacteriol. 2000 Jan; 182(2):456-62

Contrasting effects of single stranded DNA binding protein on the activity of uracil DNA glycosylase from Escherichia coli towards different DNA substrates

N V Kuma, U Varshney
Nucleic Acids Res. 1997 Jun 15; 25(12): 2336–2343

The git5 Gb and git11 Gg Form an Atypical Gbg Dimer Acting in the Fission Yeast Glucose/cAMP Pathway

Sheila Landry, Charles S Hoffman
Genetics 157(3), March 2001

DNA sequences in gal operon override transcription elongation blocks

Lewis DE, Komissarova N, Le P, Kashlev M, Adhya S
J Mol Biol. 2008 Oct 17; 382(4):843-58
doi: 10.1016/j.jmb.2008.07.060

DNA Repair Gene Polymorphisms and Risk of Pancreatic Cancer

Li D, Suzuki H, Liu B, Morris J, Liu J, Okazaki T, Li Y, Chang P, Abbruzzese JL
Clin Cancer Res. 2009 Jan 15; 15(2):740-6
doi: 10.1158/1078-0432.CCR-08-1607.

Genetic polymorphisms in transforming growth factor beta-1 (TGFB1) and childhood asthma and atopy

Li H, Romieu I, Wu H, Sienra-Monge JJ, Ramírez-Aguilar M, del Río-Navarro BE, del Lara-Sánchez IC, Kistner EO, Gjessing HK, London SJ
Hum Genet. 2007 Jun; 121(5):529-38
DOI: 10.1007/s00439-007-0337-z

Effects of base excision repair gene polymorphisms on pancreatic cancer survival

Li D, Li Y, Jiao L, Chang DZ, Beinart G, Wolff RA, Evans DB, Hassan MM, Abbruzzese JL
Int J Cancer. 2007 Apr 15; 120(8):1748-54 DOI: 10.1002/ijc.22301

Single Nucleotide Polymorphisms of RecQ1, RAD54L and ATM Genes Are Associated With Reduced Survival of Pancreatic Cancer

Li D, Frazier M, Evans DB, Hess KR, Crane CH, Jiao L, Abbruzzese JL
J Clin Oncol. 2006 Apr 10; 24(11):1720-8
DOI: 10.1200/JCO.2005.04.4206

Characterization of Coliphage PR772 and Evaluation of Its Use for Virus Filter Performance Testing

Lute S, Aranha H, Tremblay D, Liang D, Ackermann HW, Chu B, Moineau S, Brorson K
Appl Environ Microbiol. 2004 Aug; 70(8):4864-71
DOI: 10.1128/AEM.70.8.4864-4871.2004

DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription

Majdalani N, Cunning C, Sledjeski D, Elliott T, Gottesman S
Proc Natl Acad Sci U S A. 1998 Oct 13; 95(21):12462-7.

FGFR2 intronic SNPs and breast cancer risk; associations with tumor characteristics and interactions with exogenous exposures and other known breast cancer risk factors

Marian C, Ochs-Balcom HM, Nie J, Kallakury BV, Ambrosone CB, Trevisan M, Edge S, Shields PG, Freudenheim JL
Int J Cancer. 2011 Aug 1; 129(3):702-12
doi: 10.1002/ijc.25686

Human P2Y1 Receptor: Molecular Modeling and Site-Directed Mutagenesis as Tools To Identify Agonist and Antagonist Recognition Sites

Stefano Moro, Danping Guo, Emidio Camaioni, José L. Boyer, T. Kendall Harden, Kenneth A. Jacobson
J Med Chem. 1998 Apr 23; 41(9): 1456–1466
doi: 10.1021/jm970684u

Telmisartan directly ameliorates the neuronal inflammatory response to IL-1β partly through the JNK/c-Jun and NADPH oxidase pathways

Pang T, Wang J, Benicky J, Sánchez-Lemus E, Saavedra JM
J Neuroinflammation. 2012 May 29; 9:102
doi: 10.1186/1742-2094-9-102

Biochemical Properties of Neisseria gonorrhoeae LgtE

Andrzej Piekarowicz, Daniel C. Stein
Journal of Bacteriology 2002
DOI: 10.1128/JB.184.23.6410-6416.2002

Genome Erosion in a Nitrogen-Fixing Vertically Transmitted Endosymbiotic Multicellular Cyanobacterium

Liang Ran, John Larsson, Theoden Vigil-Stenman, Johan A. A. Nylander, Karolina Ininbergs, Wei-Wen Zheng, Alla Lapidus, Stephen Lowry, Robert Haselkorn, Birgitta Bergman
PLoS One July 8, 2010
https://doi.org/10.1371/journal.pone.0011486

rs4919510 in hsa-mir-608 Is Associated with Outcome but Not Risk of Colorectal Cancer

Bríd M. Ryan, Andrew C. McClary, Nicola Valeri, Dillon Robinson, Alessio Paone, Elise D. Bowman, Ana I. Robles, Carlo Croce, Curtis C. Harris
PLoS One May 11, 2012
https://doi.org/10.1371/journal.pone.0036306

Genetic Polymorphisms in CYP17, CYP3A4, CYP19A1, SRD5A2, IGF-1, and IGFBP-3 and Prostate Cancer Risk in African-American Men: The Flint Men’s Health Study

Sarma AV, Dunn RL, Lange LA, Ray A, Wang Y, Lange EM, Cooney KA
Prostate. 2008 Feb 15; 68(3):296-305
doi: 10.1002/pros.20696.

Human B-cell lines constitutively express and secrete interleukin-16

Sharma V, Sparks JL, Vail JD
Immunology. 2000 Feb; 99(2):266-71.

GSTM1, GSTT1, GSTP1, and GSTA1 Polymorphisms and Urinary Isothiocyanate Metabolites following Broccoli Consumption in Humans

Susan E. Steck, Marilie D. Gammon, James R. Hebert, Denise E. Wall, Steven H. Zeisel
J Nutr. 2007 Apr; 137(4): 904–909
doi: 10.1093/jn/137.4.904

Probable Identification of a Membrane-Associated Repressor of Bacillus subtilis DNA Replication as the E2 Subunit of the Pyruvate Dehydrogenase Complex

Andrew Stei, William Firshein
J Bacteriol. 2000 Apr; 182(8): 2119–2124

Suppressors of an Adenylate Cyclase Deletion in the Fission Yeast Schizosaccharomyces pombe

Stiefel J, Wang L, Kelly DA, Janoo RT, Seitz J, Whitehall SK, Hoffman CS
Eukaryot Cell. 2004 Jun; 3(3):610-9
DOI: 10.1128/EC.3.3.610-619.2004

Dominant Suppression of Repeat-Induced Point Mutation in Neurospora crassa by a Variant Catalytic Subunit of DNA Polymerase-ζ

Ranjan Tamuli, Durgadas P. Kasbekar

Construction, expression, and characterization of a novel fully activated recombinant single-chain hepatitis C virus protease

S.S. Taremi, B. Beyer, M. Maher, N. Yao, W. Prosise, P.C. Weber, B.A. Malcolm
Protein Sci. 1998 Oct; 7(10): 2143–2149
doi: 10.1002/pro.5560071011

Redundant In Vivo Proteolytic Activities of Escherichia coli Lon and the ClpYQ (HslUV) Protease

Wu WF, Zhou Y, Gottesman S
J Bacteriol. 1999 Jun; 181(12):3681-7

The Effect of Maintaining Cognition on Risk of Disability and Death

Yaffe K, Lindquist K, Vittinghoff E, Barnes D, Simonsick EM, Newman A, Satterfield S, Rosano C, Rubin SM, Ayonayon HN, Harris T; Health, Aging and Body Compsition Study
J Am Geriatr Soc. 2010 May; 58(5):889-94
doi: 10.1111/j.1532-5415.2010.02818.x

Telomere length and cognitive function in community-dwelling elders: Findings from the Health ABC Study

Yaffe K, Lindquist K, Kluse M, Cawthon R, Harris T, Hsueh WC, Simonsick EM, Kuller L, Li R, Ayonayon HN, Rubin SM, Cummings SR; Health ABC Study
Neurobiol Aging. 2011 Nov; 32(11):2055-60
doi: 10.1016/j.neurobiolaging.2009.12.006

Predictors of maintaining cognitive function in older adults

K Yaffe, MD, A J. Fiocco, PhD, K Lindquist, MS, E Vittinghoff, PhD, E M. Simonsick, PhD, A B. Newman, MD, S Satterfield, MD, C Rosano, MD, S M. Rubin, MD, H N. Ayonayon, PhD, T B. Harris, MD, For the Health ABC Study
Neurology. 2009 Jun 9; 72(23): 2029–2035
doi: 10.1212/WNL.0b013e3181a92c36

The specificity of interaction of archaeal transducers with their cognate sensory rhodopsins is determined by their transmembrane helices

Xue-Nong Zhang, Jingya Zhu, John L. Spudich
Proc Natl Acad Sci U S A. 1999 Feb 2; 96(3): 857–862

Polymorphisms in hOGG1 and XRCC1 and Risk of Prostate Cancer: Effects Modified by Plasma Antioxidants

Zhang J, Dhakal IB, Greene G, Lang NP, Kadlubar FF
Urology. 2010 Apr; 75(4):779-85
doi: 10.1016/j.urology.2009.08.063